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Genomics / Proteomics

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IDTitleSection/TopicAuthorsKeywords
472Analysis of Gene Expression in Arachis hypogaea
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Genomics / ProteomicsHouston, Lisa; Wethall, Jamison; Curtis, Chris; Kopp, Olga.Arachis hypogaea
gene expression
major peanut allergens
99Divergent photosynthetic pathway degradation in holoparasitic sister genera Harveya and Hyobanche (Orobanchaceae): Evidence from plastid genomes
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Genomics / ProteomicsMorawetz, Jeffery; Barrett, Craig; Randle, Christopher.parasitic plants
plastome
Orobanchaceae
holoparasitism
hemiparasitism
parallel evolution
289Evolution of  R-gene Core Promoter Elements in Plants
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Genomics / ProteomicsNepal, Madhav P.; Benson, Benjamin V.; Davidson , Lukas G. ; Moore, Brian G..Disease Resistance Genes or R-genes
Core Promotor Elements
CNL Genes
Evolutionary Anaysis
803Genome Size Estimation in Medicago (Fabaceae): Independent Loss and Gain?
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Genomics / ProteomicsSteele, Kelly; Mandakova, Terezia; Steier, Julia; Wojciechowski, Martin.Medicago
genome size
586Haplotyping Assembly Refinement and Improvement II
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Genomics / ProteomicsOlsen, Christian; Qaadri, Kashef; Hsiau, Tim; Brubaker, Shane.Haplotyping
Bioinformatics
219Investigating the process of plastome degradation in an early-transitional mycoheterotrophic genus, Corallorhiza (Orchidaceae)
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Genomics / ProteomicsBarrett, Craig; Freudenstein, John; Li, Jeff; Lim, Gwynne; Mayfield-Jones, Dustin; Perez, Leticia; Pires, J. Chris; Davis, Jerrold.parasitic
chloroplast
Photosynthesis
pseudogene
deletion
coralroot
orchid
fungus
744Molecular evolution and phylogenetics of the monocot order Alismatales using whole plastid genomes
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Genomics / ProteomicsRoss, T. Gregory; Barrett, Craig; Henriquez , Claudia L; Cuenca, Argelia; Les , Donald H; DAVIS , JERROLD I; Peterson, Gitte; Stevenson, Dennis; Graham, Sean W..plastid genome
Gene loss
aquatic plants
monocots
Alismatales
501Next-generation plastome sequencing of the feather boa kelp, Egregia menziesii (Laminariales)
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Genomics / ProteomicsDarby, Hayley; Demes, Kyle; Iles, William; Graham, Sean W..plastid genome
brown algae
kelp
Laminariales
Phaeophyta
Heterokontophyta
447Organellar Genome Evolution in Asarum (Aristolochiaceae)
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Genomics / ProteomicsSinn, Brandon T.; Freudenstein, John.Asarum
Magnoliid
plastid genome
mitochondrial genome
537Parallel degradation of plastid genomes in diverse lineages of mycoheterotrophic plants
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Genomics / ProteomicsLam, Vivienne K. Y.; Merckx, Vincent; Yukawa, Tomohisa; Wulff, Adrien; Hollingsworth, Michelle; Hollingsworth, Peter; McNair, Daniel; Graham, Sean W..Mycoheterotrophy
plastid genome
Genome Evolution
691Plastome reduction and rearrangement in members of the mycoheterotrophic Monotropoideae (Ericaceae)
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Genomics / ProteomicsBroe, Michael; Freudenstein, John.plastome
mycoheterotroph
Monotropoid
438Polyploidy and transcriptome size: does genome doubling cause transcriptome doubling?
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Genomics / ProteomicsCOATE, JEREMY E; Song, Michael; DOYLE , JEFF J.polyploidy
transcriptome size
gene expression
123Populus tremuloides cell suspension cultures show distinct transcriptional responses for a phenylpropanoid pathway elicitor and two core pathway enzyme inhibitorsα
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Genomics / ProteomicsTuominen , Lindsey K; Du, Lei; Payyavula, Raja; Wilson, Mark; Nyamdari, Batbayar; Harding, Scott A; Tsai, Chung-Jui.phenylpropanoids
gene expression
microarray
carbon-nitrogen metabolism
secondary metabolism
Populus
cell culture
858Soybean Disease Resistance Genes and Their Evolutionary Divergence
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Genomics / ProteomicsBenson, Benjamin V.; Nepal, Madhav P.; Subramanian , Senthil ; Ali, Shaukat..Disease Resistance Genes
CNL Genes
Soybean
Gene Clustering
Bioinformatics
Pericentromeric positioning
534The root of the flowering plants, re-re-revisited
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Genomics / ProteomicsMarques, Isabel; Les, Don ; Macfarlane, Terry D. ; Conran, John G.; Rudall, Paula; Logacheva, Maria ; Sokoloff, Dmitry D. ; Remizowa, Margarita V. ; Graham, Sean W..
545The smallest plastid genome in flowering plants found in the holoparasitic Hydnora visseri (Hydnoraceae)
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Genomics / ProteomicsNaumann , Julia ; Der, Joshua; Honaas, Loren; Wafula, Eric; Wagner, Sarah; Ralph, Paula; Bolin, Jay; Maass, Erika; Neinhuis, Christoph; WANKE, STEFAN; dePamphilis, Claude.plastid genome
mitochondrial genome
parasitic plants
Piperales
295Undergraduate Research Project on Genome-wide Identification of Disease Resistance Genes in Cultivated Barley (Hordeum vulgare; Poaceae)
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Genomics / ProteomicsAndersen , Ethan J. ; Nepal, Madhav P.; Opitz , Elizabeth A.; Benson, Benjamin V..Disease Resistance Genes
Barley Genome
Hordeum vulgare
CNL Genes
Barley Genomics
292Undergraduate Research Project on Indentification of Disease Resistance Genes in Foxtail Millet (Seteria italica; Poaceae) Genome
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Genomics / ProteomicsOpitz , Elizabeth A.; Nepal, Madhav P.; Andersen , Ethan J. ; Benson, Benjamin V..Disease Resistance Genes or R-genes
genomics
Foxtail Millet
Setaria italica
CNL Genes
Bioinformatics
787Using a duplicated nuclear gene (phosphoglycerate kinase; PGK) to explore the phylogeny of the aquatic plant family Hydatellaceae
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Genomics / ProteomicsLin, Qianshi; Marques, Isabel; Macfarlane, Terry D. ; Conran, John G.; Graham, Sean W..ANITA grade
gene tree
gene duplication
species tree
low-copy nuclear genes
multi-species coalescent
water lilies
436
Canceled
Using transcriptomes for comparative gene family evolution: Examples from Apocynaceae
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Genomics / ProteomicsStraub, Shannon; Bailey, C. Donovan; Cronn, Richard C.; Fishbein, Mark; Liston, Aaron.Transcriptome
Asclepias
Apocynaceae
gene family evolution
Comparative genomics

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