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Sessions for Friday, July 25th, 2014
AfternoonRG1
Sessions for Saturday, July 26th, 2014
MorningBR1BR2RG2BK1
AfternoonEX1BK2
EveningM01
Sessions for Sunday, July 27th, 2014
MorningBR3BR4RG3M02TE01WS01WS02WS03WS04WS05WS06WS07WS08WS09M03M04M05BK3M07M08M09M10M12
AfternoonEX2PR1M11WS10WS11WS13WS14WS15WS17WS20BK4WS16WS18WS19M13M14M16M15
EveningS1EX3MX1R1
Sessions for Monday, July 28th, 2014
MorningBR5M17M18PR2RG4TE02TE031234SY015678BR6EX4BK59S2
AfternoonM19M20TE04TE05TE061011121314C1SY02SY03M21BK6M22M23P
EveningM24MX2TE09M25TE08TE10
Sessions for Tuesday, July 29th, 2014
MorningEX5BR8M26M27M28PR3RG5TE111516171819SY04SY0520212223BK72425S3M29
AfternoonM30M31TE12L1262728293031C2D1SY06SY0747BK8M32S5M33TE07TE13M34M35M36
EveningMX3TE19TE14
Sessions for Wednesday, July 30th, 2014
MorningBR9M37PR4RG6TE15TE1632333435SY08SY093637BK938C3
AfternoonL2TE1839404142434445S6SY10SY11M38BK1046M39R2M40S7
EveningR3
Sessions for Thursday, July 31st, 2014
MorningBR10M41
AfternoonL3L4

Presentations for Session 43

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OrderDate/TimeTitleSection/TopicTypeAuthorsKeywords
Wednesday, July 30th
1:30 pm to 5:15 pm · Evergreen/Grove
Session 43: Contributed Papers: Phylogenomics
Presiding: JERROLD I DAVIS , CORNELL UNIVERSITY; Elizabeth Kellogg, Donald Danforth Plant Science Center
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43001July 30th 1:30 pmInferring large phylogenies under the coalescent model using SNPs from next-generation sequence data
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PhylogenomicsOral PaperBlischak, Paul; Wolfe, Andrea; Kubatko, Laura.Coalescent
species tree
quartet sampling
next-generation sequencing
simulation
43002July 30th 1:45 pmMarkerMiner 1.0: A New Pipeline and Tool for Phylogenetic Marker Development Using Angiosperm Transcriptomes
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PhylogenomicsOral PaperChamala, Srikar; Godden, Grant T.; Garcia, Nicolas; Jordon-Thaden, Ingrid; Soltis, Douglas E.; SOLTIS, PAMELA S..single copy nuclear genes
marker discovery
transcriptomes
phylogenomics
next-generation sequencing
angiosperms
Bioinformatics
43003July 30th 2:00 pmThe Stratified Jackknife, a method for the analysis of phylogenetic support in multi-partition data matrices
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PhylogenomicsOral PaperDAVIS , JERROLD I; Barrett, Craig.jackknife
phylogenetics
supermatrix
support
43004July 30th 2:15 pmConstructing phylogenetic datasets from bait-capture data without a genome: strategies and challenges
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PhylogenomicsOral PaperJohnson , Matthew G; Wickett, Norman; Devos, Nicolas; Liu, Yang; Medina, Rafael; Goffinet, Bernard; Shaw, Jonathan.targeted sequence capture
bioinformatics pipeline
bryophtyes
plastid data
43005July 30th 2:30 pmReconstructing gene family evolution in bryophytes: diversification, duplication, and horizontal transfer
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PhylogenomicsOral PaperWickett, Norman; Johnson , Matthew G; Shaw, Jonathan; Goffinet, Bernard.bryophytes
genomics
Transcriptome
1KP
gene family evolution
RNA Seq
horizontal gene transfer
whole genome duplication
genome sequencing
next generation sequencing
43006July 30th 2:45 pmAnchored Phylogenomics in Angiosperms: Maximizing Data Combinability Through Coordinated Locus Selection
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PhylogenomicsOral PaperMAST , AUSTIN R; Lemmon, Alan; Buddenhagen, Chris; Lemmon, Emily.angiosperms
Anchored Phylogenomics
Sequence Capture
target enrichment
phylogenomics
43007July 30th 3:00 pmBreak
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Phylogenomics
43008July 30th 3:45 pmUse of genome skimming to resolve phylogenies of recent radiations, a case of a Compositae in the paramo
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PhylogenomicsOral PaperVargas , Oscar M; Simpson, Beryl.Chloroplast genome
Compositae
Diplostephium
genome skimming
mitochondrial genome
next generation sequencing
Páramo
phylogenetics
phylogenomics
rapid radiation
ribosomal DNA
43009July 30th 4:00 pmPhylogeny of Andropogoneae (Poaceae) and a new tool for automated assembly of plastomes
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PhylogenomicsOral PaperMcKain, Michael; Hartsock, Ryan; Hodge, John; Layton, Daniel; Pasquet, Rémy; Vela, Dilys; Welker, Cassiano; Wilson, Mark; Zhong, Jinshun; Kellogg, Elizabeth.Poaceae
plastome
Panicoideae
Photosynthesis
43010July 30th 4:15 pmPhylogenomics of the plant family Araceae
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PhylogenomicsOral PaperHenriquez , Claudia L; Arias, Tatiana; Pires, J. Chris; Croat, Thomas B.; Schaal, Barbara A..Araceae
next generation sequencing
clade
Phylogeny
43011July 30th 4:30 pmA targeted subgenomic approach for phylogenomics based on microfluidic PCR and high throughput sequencing
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PhylogenomicsOral PaperUribe-Convers, Simon; Settles, Matt L.; Tank, David C..Microfluidic Amplification
Fluidigm
PPR genes
COSII
nuclear low or single copy genes
microfluidic PCR
43012July 30th 4:45 pmPhylogenetic Estimation in Chloridoid Grasses (Poaceae) using Hyb-Seq NGS Data
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PhylogenomicsOral PaperFISHER, Amanda; Bell , Hester; Ingram, Amanda L.; Hasenstab, Kristen; Columbus, J. Travis.grass phylogeny
next-generation sequencing
polyploidy
43013July 30th 5:00 pmA Research Workflow for Development of Single-Copy Nuclear Loci and High-throughput Targeted Enrichment for Two or More Phylogenetic Studies
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PhylogenomicsOral PaperJordon-Thaden, Ingrid; Uribe-Convers, Simon; Godden, Grant T.; Chamala, Srikar; Tank, David C.; MARTINE , CHRISTOPHER T.Fluidigm
Single Copy Nuclear
Solanum
Draba
Data mining
phylogenomics
transcriptomics
marker discovery
next generation sequencing

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