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American Bryological and Lichenological Society (ABLS)
American Fern Society (AFS)
American Society of Plant Taxonomists (ASPT)
Botanical Society of America (BSA)
International Association for Plant Taxonomy (IAPT)

Presentations for Program:: Phylogenomics

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SessionDate/TimeLocationTitleTypeAuthorsKeywords

Monday, July 28th

Monday, July 28th, 5:30 pm to 7:00 pm · Eyrie/Boise Centre
Session P: Contributed Posters: Phylogenomics Posters
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PPL001July 28th 5:30 pmEyrie/Boise CentreFrom Cacti to Carnivores: Using transcriptomics to explore the evolution of the highly diverse and globally distributed Caryophyllales
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Poster: PhylogenomicsBrockington, Samuel F.; Yang, Ya; Moore, Michael J.; Smith, Stephen A..Caryophyllales
phylogenomics
Photosynthesis
floral development
Pigmentation
drought tolerance
transcriptomics
PPL002July 28th 5:30 pmEyrie/Boise CentreTarget enrichment sequencing of the chloroplast genome of  Neotropical Guatteria (Annonaceae) trees
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Poster: PhylogenomicsInsupp, Bjorn; Erkens, Roy H.J.; Brandão, Rita D..Annonaceae
next-generation sequencing
target enrichment
Guatteria
PPL003July 28th 5:30 pmEyrie/Boise CentreIntragenomic polymorphisms among high-copy loci: A genus-wide study of nuclear ribosomal DNA in Asclepias (Apocynaceae)
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Poster: PhylogenomicsWeitemier, Kevin; Straub, Shannon; Fishbein, Mark; Liston, Aaron.concerted evolution
genome skimming
high-copy
intragenomic polymorphism
intra-individual site polymorphism (2ISP)
nuclear ribosomal DNA (nrDNA)
Asclepias
PPL004July 28th 5:30 pmEyrie/Boise CentreA complete chloroplast sequences from Carex siderosticta Hance (Cyperaceae): one of the largest chloroplast genome in angiosperms
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Poster: PhylogenomicsJung, Jongduk; Kim, Kyung Hee; Yang, Tae-Jin; Park, Jongsun; Kim, Sangtae.Carex siderosticta
Cyperaceae
Chloroplast genome
Illumina
IR
PPL005July 28th 5:30 pmEyrie/Boise CentreDeveloping and evaluating novel nuclear markers for phylogenetic reconstruction in the myrrh genus, Commiphora Jacq. (Burseraceae) using multiplexed target enrichment
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Poster: PhylogenomicsCoy , Kiera A; Weeks, Andrea; Gostel, Morgan.

Wednesday, July 30th

Wednesday, July 30th, 1:30 pm to 5:15 pm · Evergreen/Grove
Session 43: Contributed Papers: Phylogenomics II
Presiding: JERROLD I DAVIS , CORNELL UNIVERSITY; Elizabeth Kellogg, Donald Danforth Plant Science Center
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43001July 30th 1:30 pmEvergreen/GroveInferring large phylogenies under the coalescent model using SNPs from next-generation sequence data
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Oral PaperBlischak, Paul; Wolfe, Andrea; Kubatko, Laura.Coalescent
species tree
quartet sampling
next-generation sequencing
simulation
43002July 30th 1:45 pmEvergreen/GroveMarkerMiner 1.0: A New Pipeline and Tool for Phylogenetic Marker Development Using Angiosperm Transcriptomes
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Oral PaperChamala, Srikar; Godden, Grant T.; Garcia, Nicolas; Jordon-Thaden, Ingrid; Soltis, Douglas E.; SOLTIS, PAMELA S..single copy nuclear genes
marker discovery
transcriptomes
phylogenomics
next-generation sequencing
angiosperms
Bioinformatics
43003July 30th 2:00 pmEvergreen/GroveThe Stratified Jackknife, a method for the analysis of phylogenetic support in multi-partition data matrices
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Oral PaperDAVIS , JERROLD I; Barrett, Craig.jackknife
phylogenetics
supermatrix
support
43004July 30th 2:15 pmEvergreen/GroveConstructing phylogenetic datasets from bait-capture data without a genome: strategies and challenges
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Oral PaperJohnson , Matthew G; Wickett, Norman; Devos, Nicolas; Liu, Yang; Medina, Rafael; Goffinet, Bernard; Shaw, Jonathan.targeted sequence capture
bioinformatics pipeline
bryophtyes
plastid data
43005July 30th 2:30 pmEvergreen/GroveReconstructing gene family evolution in bryophytes: diversification, duplication, and horizontal transfer
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Oral PaperWickett, Norman; Johnson , Matthew G; Shaw, Jonathan; Goffinet, Bernard.bryophytes
genomics
Transcriptome
1KP
gene family evolution
RNA Seq
horizontal gene transfer
whole genome duplication
genome sequencing
next generation sequencing
43006July 30th 2:45 pmEvergreen/GroveAnchored Phylogenomics in Angiosperms: Maximizing Data Combinability Through Coordinated Locus Selection
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Oral PaperMAST , AUSTIN R; Lemmon, Alan; Buddenhagen, Chris; Lemmon, Emily.angiosperms
Anchored Phylogenomics
Sequence Capture
target enrichment
phylogenomics
July 30th 3:00 pmEvergreen/GroveBreak
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43008July 30th 3:45 pmEvergreen/GroveUse of genome skimming to resolve phylogenies of recent radiations, a case of a Compositae in the paramo
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Oral PaperVargas , Oscar M; Simpson, Beryl.Chloroplast genome
Compositae
Diplostephium
genome skimming
mitochondrial genome
next generation sequencing
Páramo
phylogenetics
phylogenomics
rapid radiation
ribosomal DNA
43009July 30th 4:00 pmEvergreen/GrovePhylogeny of Andropogoneae (Poaceae) and a new tool for automated assembly of plastomes
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Oral PaperMcKain, Michael; Hartsock, Ryan; Hodge, John; Layton, Daniel; Pasquet, Rémy; Vela, Dilys; Welker, Cassiano; Wilson, Mark; Zhong, Jinshun; Kellogg, Elizabeth.Poaceae
plastome
Panicoideae
Photosynthesis
43010July 30th 4:15 pmEvergreen/GrovePhylogenomics of the plant family Araceae
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Oral PaperHenriquez , Claudia L; Arias, Tatiana; Pires, J. Chris; Croat, Thomas B.; Schaal, Barbara A..Araceae
next generation sequencing
clade
Phylogeny
43011July 30th 4:30 pmEvergreen/GroveA targeted subgenomic approach for phylogenomics based on microfluidic PCR and high throughput sequencing
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Oral PaperUribe-Convers, Simon; Settles, Matt L.; Tank, David C..Microfluidic Amplification
Fluidigm
PPR genes
COSII
nuclear low or single copy genes
microfluidic PCR
43012July 30th 4:45 pmEvergreen/GrovePhylogenetic Estimation in Chloridoid Grasses (Poaceae) using Hyb-Seq NGS Data
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Oral PaperFISHER, Amanda; Bell , Hester; Ingram, Amanda L.; Hasenstab, Kristen; Columbus, J. Travis.grass phylogeny
next-generation sequencing
polyploidy
43013July 30th 5:00 pmEvergreen/GroveA Research Workflow for Development of Single-Copy Nuclear Loci and High-throughput Targeted Enrichment for Two or More Phylogenetic Studies
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Oral PaperJordon-Thaden, Ingrid; Uribe-Convers, Simon; Godden, Grant T.; Chamala, Srikar; Tank, David C.; MARTINE , CHRISTOPHER T.Fluidigm
Single Copy Nuclear
Solanum
Draba
Data mining
phylogenomics
transcriptomics
marker discovery
next generation sequencing

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