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| Session | Date/Time | Title | Section/Topic | Type | Authors | Keywords |
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Monday, July 28th |
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| SY01001 | July 28th 8:00 am | Introductory remarks: The history of phylogenetic comparative methods and its future
Log in to add this item to your schedule | Phylogenetic Comparative Methods and Approaches in Plant Science | Symposium | Schenk, John. | phylogenetic comparative methods
Darwin
Phylogeny
models
Character evolution
History of science |
| SY01SUM | July 28th 8:00 am | Phylogenetic Comparative Methods and Approaches in Plant Science
Log in to add this item to your schedule | Phylogenetic Comparative Methods and Approaches in Plant Science | Symposium | Schenk, John. | Character evolution
comparative analyses
diversification
ecological diversification
macroevolution
phylogenetics |
| SY01002 | July 28th 8:15 am | Exploring heterogeneity in binary character evolution
Log in to add this item to your schedule | Phylogenetic Comparative Methods and Approaches in Plant Science | Symposium | Beaulieu, Jeremy M.. | Hidden rates model
Character evolution
flowering plants |
| SY01003 | July 28th 8:45 am | How Traits Shape Trees: New comparative approaches to understanding the role of character evolution in lineage diversification
Log in to add this item to your schedule | Phylogenetic Comparative Methods and Approaches in Plant Science | Symposium | Smith, Stacey D.. | character reconstruction
Phylogeny
Speciation
extinction
diversification |
| SY01004 | July 28th 9:15 am | New (and Improved) Phylogenetic Methods for Detecting Shifts in Rates of Lineage Diversification
Log in to add this item to your schedule | Phylogenetic Comparative Methods and Approaches in Plant Science | Symposium | Moore, Brian; May, Michael, R. | diversification rates shifts
Speciation
extinction
Phylogeny |
| July 28th 9:45 am | Break
Log in to add this item to your schedule | Phylogenetic Comparative Methods and Approaches in Plant Science | | | |
| SY01006 | July 28th 10:15 am | Comparative biology on large phylogenetic trees
Log in to add this item to your schedule | Phylogenetic Comparative Methods and Approaches in Plant Science | Symposium | Sanderson, Michael. | phylogenetic methods |
| SY01007 | July 28th 10:45 am | Examining conflict and signal in phylogenies using graphs and other tools
Log in to add this item to your schedule | Phylogenetic Comparative Methods and Approaches in Plant Science | Symposium | Smith, Stephen A.; Brown, Joseph; Hinchliff, Cody; Yang, Ya. | phylogenetic methods
phylogenomic |
| SY01008 | July 28th 11:15 am | The mega-fication of comparative biology
Log in to add this item to your schedule | Phylogenetic Comparative Methods and Approaches in Plant Science | Symposium | Edwards, Erika. | |
| July 28th 11:45 am | Discussion
Log in to add this item to your schedule | Phylogenetic Comparative Methods and Approaches in Plant Science | | | |
Tuesday, July 29th |
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| July 29th 7:30 pm | ASPT Banquet
Log in to add this item to your schedule | Systematics Section/ASPT | | | |
Wednesday, July 30th |
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| 34001 | July 30th 8:00 am | Divergent maximum-likelihood-branch-support values for polytomies
Log in to add this item to your schedule | Systematics Section/ASPT | Paper | SIMMONS , MARK PITKIN; NORTON, ANDREW P.. | bootstrap
false positive
GTRCAT model
hard polytomy
random seed
SH-like aLRT |
| 34002 | July 30th 8:15 am | Disparate parametric branch-support values from ambiguous characters
Log in to add this item to your schedule | Systematics Section/ASPT | Paper | SIMMONS , MARK PITKIN; Randle, Christopher. | ambiguous optimization
bootstrap
decisive taxon coverage
parsimony
redundant taxa
SH-like aLRT
maximum likelihood
RAxML |
| 34003 | July 30th 8:30 am | Plant phylogenomics and the coalescent
Log in to add this item to your schedule | Systematics Section/ASPT | Paper | Xi, Zhenxiang; Liu, Liang; Rest, Joshua; Davis, Charles. | coalescence
concatenation
phylogenomics
seed plants |
| 34004 | July 30th 8:45 am | Markers in time and space: The current state of the field of plant phylogeography
Log in to add this item to your schedule | Systematics Section/ASPT | Paper | Morris, Ashley B.; Leonard, O. Rayne; Germain-Aubrey, Charlotte; Shaw, Joey. | |
| 34005 | July 30th 9:00 am | A Molecular Phylogeny of the Wisconsin Flora
Log in to add this item to your schedule | Systematics Section/ASPT | Paper | Cameron, Kenneth; SYTSMA , KENNETH JAY; Waller, Donald H; Givnish, Tom; Pace , Matthew Charles; Li, Pan; SPALINK, DANIEL; Drummond, Chloe; Zaborsky, John; Rose, Jeff; Alverson, Bil; Kriebel, Ricardo. | Floristics
DNA Barcoding
phylogenetics
functional traits
diversity
Herbarium |
| 34006 | July 30th 9:15 am | A critique of the lineage concept of species and argument for a phenotypic alternative
Log in to add this item to your schedule | Systematics Section/ASPT | Paper | Freudenstein, John; Broe, Michael; Sinn, Brandon T.; Folk, Ryan. | species-concept |
| July 30th 9:30 am | Break
Log in to add this item to your schedule | Systematics Section/ASPT | | | |
| 34008 | July 30th 10:15 am | A target-capture approach to assessing deep relationships and support among major lineages of Zingiberales
Log in to add this item to your schedule | Systematics Section/ASPT | Paper | Barrett, Craig; Sass, Chodon; Smith, Selena; Specht, Chelsea. | phylogenomics
gingers
Musaceae
Heliconiaceae
next generation sequencing
support |
| 34009 | July 30th 10:30 am | Consequences of polyploidy: Phylogeny, phyloecology, and expression of duplicated genes in Leucanthemum Mill. (Compositae, Anthemideae)
Log in to add this item to your schedule | Systematics Section/ASPT | Paper | Oberprieler, Christoph; Greiner, Roland; Konowalik, Kamil; Talianova, Martina; Tomasello, Salvatore; Wagner, Florian; Vogt, Robert. | polyploidy
Asteraceae
hybridization
species tree
gene tree
gene expression
phyloecology |
| 34010 | July 30th 10:45 am | Photosynthetic evolution in the grass tribe Paniceae
Log in to add this item to your schedule | Systematics Section/ASPT | Paper | Washburn , Jacob D; Schnable, James; Conant, Gavin; Pires, J. Chris. | phylogenomics
Grass
Metabolic Network
Paniceae
Photosynthesis
C4 |
| 34011 | July 30th 11:00 am | Plastid phylogenomics of Dioscoreales and Pandanales: Reconstructing higher-order relationships and characterizing plastid genome evolution
Log in to add this item to your schedule | Systematics Section/ASPT | Paper | Soto Gomez, Marybel; Lam, Vivienne K. Y.; Siu, Renée W. I. ; Graham, Sean W.. | Comparative genomics
Dioscoreales-Pandanales
plastid data |
| 34012 | July 30th 11:15 am | A Multi-Step Comparison of Short-Read Full Plastome Sequence Assembly Methods in Grasses
Log in to add this item to your schedule | Systematics Section/ASPT | Paper | Wysocki, William P.; Clark, Lynn G.; Kelchner, Scot A.; Burke, Sean V.; Pires, J. Chris; Edger, Pat; Mayfield-Jones, Dustin; Triplett, Jimmy K.; Columbus, J. Travis; Ingram, Amanda L.; Duvall, Melvin R.. | phylogenomics
next-generation sequencing
plastome
Poaceae |
| 34013 | July 30th 11:30 am | Phylogeny of the Portulacineae using targeted sequence capture
Log in to add this item to your schedule | Systematics Section/ASPT | Paper | MOORE , ABIGAIL J; De Vos, Jurriaan M; Edwards, Erika. | Portulacineae
CAM photosynthesis
C4 photosynthesis
targeted sequence capture
next-generation sequencing |
| 34014 | July 30th 11:45 am | Resolving the Phylogenetic Relationships of the Carnivorous Plant Genus Sarracenia using Gene Target Enrichment
Log in to add this item to your schedule | Systematics Section/ASPT | Paper | Stephens, Jessica; Rogers, Willie; Heyduk, Karolina; Determann, Ron; Cruse-Sanders, Jennifer; Malmberg, Russell. | Sarracenia
phylogenetics
Coalescent Methods
target enrichment |
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| 43001 | July 30th 1:30 pm | Inferring large phylogenies under the coalescent model using SNPs from next-generation sequence data
Log in to add this item to your schedule | Phylogenomics | Paper | Blischak, Paul; Wolfe, Andrea; Kubatko, Laura. | Coalescent
species tree
quartet sampling
next-generation sequencing
simulation |
| 43002 | July 30th 1:45 pm | MarkerMiner 1.0: A New Pipeline and Tool for Phylogenetic Marker Development Using Angiosperm Transcriptomes
Log in to add this item to your schedule | Phylogenomics | Paper | Chamala, Srikar; Godden, Grant T.; Garcia, Nicolas; Jordon-Thaden, Ingrid; Soltis, Douglas E.; SOLTIS, PAMELA S.. | single copy nuclear genes
marker discovery
transcriptomes
phylogenomics
next-generation sequencing
angiosperms
Bioinformatics |
| 43003 | July 30th 2:00 pm | The Stratified Jackknife, a method for the analysis of phylogenetic support in multi-partition data matrices
Log in to add this item to your schedule | Phylogenomics | Paper | DAVIS , JERROLD I; Barrett, Craig. | jackknife
phylogenetics
supermatrix
support |
| 43004 | July 30th 2:15 pm | Constructing phylogenetic datasets from bait-capture data without a genome: strategies and challenges
Log in to add this item to your schedule | Phylogenomics | Paper | Johnson , Matthew G; Wickett, Norman; Devos, Nicolas; Liu, Yang; Medina, Rafael; Goffinet, Bernard; Shaw, Jonathan. | targeted sequence capture
bioinformatics pipeline
bryophtyes
plastid data |
| 43005 | July 30th 2:30 pm | Reconstructing gene family evolution in bryophytes: diversification, duplication, and horizontal transfer
Log in to add this item to your schedule | Phylogenomics | Paper | Wickett, Norman; Johnson , Matthew G; Shaw, Jonathan; Goffinet, Bernard. | bryophytes
genomics
Transcriptome
1KP
gene family evolution
RNA Seq
horizontal gene transfer
whole genome duplication
genome sequencing
next generation sequencing |
| 43006 | July 30th 2:45 pm | Anchored Phylogenomics in Angiosperms: Maximizing Data Combinability Through Coordinated Locus Selection
Log in to add this item to your schedule | Phylogenomics | Paper | MAST , AUSTIN R; Lemmon, Alan; Buddenhagen, Chris; Lemmon, Emily. | angiosperms
Anchored Phylogenomics
Sequence Capture
target enrichment
phylogenomics |
| July 30th 3:00 pm | Break
Log in to add this item to your schedule | Phylogenomics | | | |
| 43008 | July 30th 3:45 pm | Use of genome skimming to resolve phylogenies of recent radiations, a case of a Compositae in the paramo
Log in to add this item to your schedule | Phylogenomics | Paper | Vargas , Oscar M; Simpson, Beryl. | Chloroplast genome
Compositae
Diplostephium
genome skimming
mitochondrial genome
next generation sequencing
Páramo
phylogenetics
phylogenomics
rapid radiation
ribosomal DNA |
| 43009 | July 30th 4:00 pm | Phylogeny of Andropogoneae (Poaceae) and a new tool for automated assembly of plastomes
Log in to add this item to your schedule | Phylogenomics | Paper | McKain, Michael; Hartsock, Ryan; Hodge, John; Layton, Daniel; Pasquet, Rémy; Vela, Dilys; Welker, Cassiano; Wilson, Mark; Zhong, Jinshun; Kellogg, Elizabeth. | Poaceae
plastome
Panicoideae
Photosynthesis |
| 43010 | July 30th 4:15 pm | Phylogenomics of the plant family Araceae
Log in to add this item to your schedule | Phylogenomics | Paper | Henriquez , Claudia L; Arias, Tatiana; Pires, J. Chris; Croat, Thomas B.; Schaal, Barbara A.. | Araceae
next generation sequencing
clade
Phylogeny |
| 43011 | July 30th 4:30 pm | A targeted subgenomic approach for phylogenomics based on microfluidic PCR and high throughput sequencing
Log in to add this item to your schedule | Phylogenomics | Paper | Uribe-Convers, Simon; Settles, Matt L.; Tank, David C.. | Microfluidic Amplification
Fluidigm
PPR genes
COSII
nuclear low or single copy genes
microfluidic PCR |
| 43012 | July 30th 4:45 pm | Phylogenetic Estimation in Chloridoid Grasses (Poaceae) using Hyb-Seq NGS Data
Log in to add this item to your schedule | Phylogenomics | Paper | FISHER, Amanda; Bell , Hester; Ingram, Amanda L.; Hasenstab, Kristen; Columbus, J. Travis. | grass phylogeny
next-generation sequencing
polyploidy |
| 43013 | July 30th 5:00 pm | A Research Workflow for Development of Single-Copy Nuclear Loci and High-throughput Targeted Enrichment for Two or More Phylogenetic Studies
Log in to add this item to your schedule | Phylogenomics | Paper | Jordon-Thaden, Ingrid; Uribe-Convers, Simon; Godden, Grant T.; Chamala, Srikar; Tank, David C.; MARTINE , CHRISTOPHER T. | Fluidigm
Single Copy Nuclear
Solanum
Draba
Data mining
phylogenomics
transcriptomics
marker discovery
next generation sequencing |
