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| Session | Date/Time | Location | Title | Type | Authors | Keywords |
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Monday, July 28th |
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| PPL001 | July 28th 5:30 pm | Eyrie/Boise Centre | From Cacti to Carnivores: Using transcriptomics to explore the evolution of the highly diverse and globally distributed Caryophyllales
Log in to add this item to your schedule | Poster: Phylogenomics | Brockington, Samuel F.; Yang, Ya; Moore, Michael J.; Smith, Stephen A.. | Caryophyllales
phylogenomics
Photosynthesis
floral development
Pigmentation
drought tolerance
transcriptomics |
| PPL002 | July 28th 5:30 pm | Eyrie/Boise Centre | Target enrichment sequencing of the chloroplast genome of Neotropical Guatteria (Annonaceae) trees
Log in to add this item to your schedule | Poster: Phylogenomics | Insupp, Bjorn; Erkens, Roy H.J.; Brandão, Rita D.. | Annonaceae
next-generation sequencing
target enrichment
Guatteria |
| PPL003 | July 28th 5:30 pm | Eyrie/Boise Centre | Intragenomic polymorphisms among high-copy loci: A genus-wide study of nuclear ribosomal DNA in Asclepias (Apocynaceae)
Log in to add this item to your schedule | Poster: Phylogenomics | Weitemier, Kevin; Straub, Shannon; Fishbein, Mark; Liston, Aaron. | concerted evolution
genome skimming
high-copy
intragenomic polymorphism
intra-individual site polymorphism (2ISP)
nuclear ribosomal DNA (nrDNA)
Asclepias |
| PPL004 | July 28th 5:30 pm | Eyrie/Boise Centre | A complete chloroplast sequences from Carex siderosticta Hance (Cyperaceae): one of the largest chloroplast genome in angiosperms
Log in to add this item to your schedule | Poster: Phylogenomics | Jung, Jongduk; Kim, Kyung Hee; Yang, Tae-Jin; Park, Jongsun; Kim, Sangtae. | Carex siderosticta
Cyperaceae
Chloroplast genome
Illumina
IR |
| PPL005 | July 28th 5:30 pm | Eyrie/Boise Centre | Developing and evaluating novel nuclear markers for phylogenetic reconstruction in the myrrh genus, Commiphora Jacq. (Burseraceae) using multiplexed target enrichment
Log in to add this item to your schedule | Poster: Phylogenomics | Coy , Kiera A; Weeks, Andrea; Gostel, Morgan. | |
Wednesday, July 30th |
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| 43001 | July 30th 1:30 pm | Evergreen/Grove | Inferring large phylogenies under the coalescent model using SNPs from next-generation sequence data
Log in to add this item to your schedule | Oral Paper | Blischak, Paul; Wolfe, Andrea; Kubatko, Laura. | Coalescent
species tree
quartet sampling
next-generation sequencing
simulation |
| 43002 | July 30th 1:45 pm | Evergreen/Grove | MarkerMiner 1.0: A New Pipeline and Tool for Phylogenetic Marker Development Using Angiosperm Transcriptomes
Log in to add this item to your schedule | Oral Paper | Chamala, Srikar; Godden, Grant T.; Garcia, Nicolas; Jordon-Thaden, Ingrid; Soltis, Douglas E.; SOLTIS, PAMELA S.. | single copy nuclear genes
marker discovery
transcriptomes
phylogenomics
next-generation sequencing
angiosperms
Bioinformatics |
| 43003 | July 30th 2:00 pm | Evergreen/Grove | The Stratified Jackknife, a method for the analysis of phylogenetic support in multi-partition data matrices
Log in to add this item to your schedule | Oral Paper | DAVIS , JERROLD I; Barrett, Craig. | jackknife
phylogenetics
supermatrix
support |
| 43004 | July 30th 2:15 pm | Evergreen/Grove | Constructing phylogenetic datasets from bait-capture data without a genome: strategies and challenges
Log in to add this item to your schedule | Oral Paper | Johnson , Matthew G; Wickett, Norman; Devos, Nicolas; Liu, Yang; Medina, Rafael; Goffinet, Bernard; Shaw, Jonathan. | targeted sequence capture
bioinformatics pipeline
bryophtyes
plastid data |
| 43005 | July 30th 2:30 pm | Evergreen/Grove | Reconstructing gene family evolution in bryophytes: diversification, duplication, and horizontal transfer
Log in to add this item to your schedule | Oral Paper | Wickett, Norman; Johnson , Matthew G; Shaw, Jonathan; Goffinet, Bernard. | bryophytes
genomics
Transcriptome
1KP
gene family evolution
RNA Seq
horizontal gene transfer
whole genome duplication
genome sequencing
next generation sequencing |
| 43006 | July 30th 2:45 pm | Evergreen/Grove | Anchored Phylogenomics in Angiosperms: Maximizing Data Combinability Through Coordinated Locus Selection
Log in to add this item to your schedule | Oral Paper | MAST , AUSTIN R; Lemmon, Alan; Buddenhagen, Chris; Lemmon, Emily. | angiosperms
Anchored Phylogenomics
Sequence Capture
target enrichment
phylogenomics |
| July 30th 3:00 pm | Evergreen/Grove | Break
Log in to add this item to your schedule | | | |
| 43008 | July 30th 3:45 pm | Evergreen/Grove | Use of genome skimming to resolve phylogenies of recent radiations, a case of a Compositae in the paramo
Log in to add this item to your schedule | Oral Paper | Vargas , Oscar M; Simpson, Beryl. | Chloroplast genome
Compositae
Diplostephium
genome skimming
mitochondrial genome
next generation sequencing
Páramo
phylogenetics
phylogenomics
rapid radiation
ribosomal DNA |
| 43009 | July 30th 4:00 pm | Evergreen/Grove | Phylogeny of Andropogoneae (Poaceae) and a new tool for automated assembly of plastomes
Log in to add this item to your schedule | Oral Paper | McKain, Michael; Hartsock, Ryan; Hodge, John; Layton, Daniel; Pasquet, Rémy; Vela, Dilys; Welker, Cassiano; Wilson, Mark; Zhong, Jinshun; Kellogg, Elizabeth. | Poaceae
plastome
Panicoideae
Photosynthesis |
| 43010 | July 30th 4:15 pm | Evergreen/Grove | Phylogenomics of the plant family Araceae
Log in to add this item to your schedule | Oral Paper | Henriquez , Claudia L; Arias, Tatiana; Pires, J. Chris; Croat, Thomas B.; Schaal, Barbara A.. | Araceae
next generation sequencing
clade
Phylogeny |
| 43011 | July 30th 4:30 pm | Evergreen/Grove | A targeted subgenomic approach for phylogenomics based on microfluidic PCR and high throughput sequencing
Log in to add this item to your schedule | Oral Paper | Uribe-Convers, Simon; Settles, Matt L.; Tank, David C.. | Microfluidic Amplification
Fluidigm
PPR genes
COSII
nuclear low or single copy genes
microfluidic PCR |
| 43012 | July 30th 4:45 pm | Evergreen/Grove | Phylogenetic Estimation in Chloridoid Grasses (Poaceae) using Hyb-Seq NGS Data
Log in to add this item to your schedule | Oral Paper | FISHER, Amanda; Bell , Hester; Ingram, Amanda L.; Hasenstab, Kristen; Columbus, J. Travis. | grass phylogeny
next-generation sequencing
polyploidy |
| 43013 | July 30th 5:00 pm | Evergreen/Grove | A Research Workflow for Development of Single-Copy Nuclear Loci and High-throughput Targeted Enrichment for Two or More Phylogenetic Studies
Log in to add this item to your schedule | Oral Paper | Jordon-Thaden, Ingrid; Uribe-Convers, Simon; Godden, Grant T.; Chamala, Srikar; Tank, David C.; MARTINE , CHRISTOPHER T. | Fluidigm
Single Copy Nuclear
Solanum
Draba
Data mining
phylogenomics
transcriptomics
marker discovery
next generation sequencing |
