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Participating Societies

American Bryological and Lichenological Society (ABLS)
American Fern Society (AFS)
American Society of Plant Taxonomists (ASPT)
Botanical Society of America (BSA)
International Association for Plant Taxonomy (IAPT)

Program for: Genomics / Proteomics


Presentations for Society\Section: Genomics / Proteomics

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SessionDate/TimeLocationTitleTypeAuthorsKeywords

Monday, July 28th

Monday, July 28th, 5:30 pm to 7:00 pm · Eyrie/Boise Centre
Session P: Contributed Posters: Genomics/Proteomics Posters
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PGP001July 28th 5:30 pmEyrie/Boise CentreEvolution of  R-gene Core Promoter Elements in Plants
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Poster: Genomics / ProteomicsNepal, Madhav P.; Benson, Benjamin V.; Davidson , Lukas G. ; Moore, Brian G..Disease Resistance Genes or R-genes
Core Promotor Elements
CNL Genes
Evolutionary Anaysis
PGP002July 28th 5:30 pmEyrie/Boise CentreUndergraduate Research Project on Indentification of Disease Resistance Genes in Foxtail Millet (Seteria italica; Poaceae) Genome
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Poster: Genomics / ProteomicsOpitz , Elizabeth A.; Nepal, Madhav P.; Andersen , Ethan J. ; Benson, Benjamin V..Disease Resistance Genes or R-genes
genomics
Foxtail Millet
Setaria italica
CNL Genes
Bioinformatics
PGP003July 28th 5:30 pmEyrie/Boise CentreUndergraduate Research Project on Genome-wide Identification of Disease Resistance Genes in Cultivated Barley (Hordeum vulgare; Poaceae)
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Poster: Genomics / ProteomicsAndersen , Ethan J. ; Nepal, Madhav P.; Opitz , Elizabeth A.; Benson, Benjamin V..Disease Resistance Genes
Barley Genome
Hordeum vulgare
CNL Genes
Barley Genomics
PGP004July 28th 5:30 pmEyrie/Boise CentreAnalysis of Gene Expression in Arachis hypogaea
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Poster: Genomics / ProteomicsHouston, Lisa; Wethall, Jamison; Curtis, Chris; Kopp, Olga.Arachis hypogaea
gene expression
major peanut allergens
PGP005July 28th 5:30 pmEyrie/Boise CentreNext-generation plastome sequencing of the feather boa kelp, Egregia menziesii (Laminariales)
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Poster: Genomics / ProteomicsDarby, Hayley; Demes, Kyle; Iles, William; Graham, Sean W..plastid genome
brown algae
kelp
Laminariales
Phaeophyta
Heterokontophyta
PGP006July 28th 5:30 pmEyrie/Boise CentreHaplotyping Assembly Refinement and Improvement II
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Poster: Genomics / ProteomicsOlsen, Christian; Qaadri, Kashef; Hsiau, Tim; Brubaker, Shane.Haplotyping
Bioinformatics

Wednesday, July 30th

Wednesday, July 30th, 8:00 am to 12:00 pm · Pines South/Boise Centre
Session 35: Contributed Papers: Genomics 1
Presiding: Kelly Steele, Arizona State University
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35001July 30th 8:00 amPines South/Boise CentreSoybean Disease Resistance Genes and Their Evolutionary Divergence
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Oral PaperBenson, Benjamin V.; Nepal, Madhav P.; Subramanian , Senthil ; Ali, Shaukat..Disease Resistance Genes
CNL Genes
Soybean
Gene Clustering
Bioinformatics
Pericentromeric positioning
35002July 30th 8:15 amPines South/Boise CentreGenome Size Estimation in Medicago (Fabaceae): Independent Loss and Gain?
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Oral PaperSteele, Kelly; Mandakova, Terezia; Steier, Julia; Wojciechowski, Martin.Medicago
genome size
35003July 30th 8:30 amPines South/Boise CentreUsing a duplicated nuclear gene (phosphoglycerate kinase; PGK) to explore the phylogeny of the aquatic plant family Hydatellaceae
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Oral PaperLin, Qianshi; Marques, Isabel; Macfarlane, Terry D. ; Conran, John G.; Graham, Sean W..ANITA grade
gene tree
gene duplication
species tree
low-copy nuclear genes
multi-species coalescent
water lilies
35004July 30th 8:45 amPines South/Boise CentrePopulus tremuloides cell suspension cultures show distinct transcriptional responses for a phenylpropanoid pathway elicitor and two core pathway enzyme inhibitorsα
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Oral PaperTuominen , Lindsey K; Du, Lei; Payyavula, Raja; Wilson, Mark; Nyamdari, Batbayar; Harding, Scott A; Tsai, Chung-Jui.phenylpropanoids
gene expression
microarray
carbon-nitrogen metabolism
secondary metabolism
Populus
cell culture
35005July 30th 9:00 amPines South/Boise Centre
Canceled
Using transcriptomes for comparative gene family evolution: Examples from Apocynaceae
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Oral PaperStraub, Shannon; Bailey, C. Donovan; Cronn, Richard C.; Fishbein, Mark; Liston, Aaron.Transcriptome
Asclepias
Apocynaceae
gene family evolution
Comparative genomics
35006July 30th 9:15 amPines South/Boise CentrePolyploidy and transcriptome size: does genome doubling cause transcriptome doubling?
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Oral PaperCOATE, JEREMY E; Song, Michael; DOYLE , JEFF J.polyploidy
transcriptome size
gene expression
35007July 30th 9:30 amPines South/Boise CentreMolecular evolution and phylogenetics of the monocot order Alismatales using whole plastid genomes
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Oral PaperRoss, T. Gregory; Barrett, Craig; Henriquez , Claudia L; Cuenca, Argelia; Les , Donald H; DAVIS , JERROLD I; Peterson, Gitte; Stevenson, Dennis; Graham, Sean W..plastid genome
Gene loss
aquatic plants
monocots
Alismatales
July 30th 9:45 amPines South/Boise CentreBreak
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35009July 30th 10:15 amPines South/Boise CentreThe smallest plastid genome in flowering plants found in the holoparasitic Hydnora visseri (Hydnoraceae)
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Oral PaperNaumann , Julia ; Der, Joshua; Honaas, Loren; Wafula, Eric; Wagner, Sarah; Ralph, Paula; Bolin, Jay; Maass, Erika; Neinhuis, Christoph; WANKE, STEFAN; dePamphilis, Claude.plastid genome
mitochondrial genome
parasitic plants
Piperales
35010July 30th 10:30 amPines South/Boise CentreDivergent photosynthetic pathway degradation in holoparasitic sister genera Harveya and Hyobanche (Orobanchaceae): Evidence from plastid genomes
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Oral PaperMorawetz, Jeffery; Barrett, Craig; Randle, Christopher.parasitic plants
plastome
Orobanchaceae
holoparasitism
hemiparasitism
parallel evolution
35011July 30th 10:45 amPines South/Boise CentreParallel degradation of plastid genomes in diverse lineages of mycoheterotrophic plants
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Oral PaperLam, Vivienne K. Y.; Merckx, Vincent; Yukawa, Tomohisa; Wulff, Adrien; Hollingsworth, Michelle; Hollingsworth, Peter; McNair, Daniel; Graham, Sean W..Mycoheterotrophy
plastid genome
Genome Evolution
35012July 30th 11:00 amPines South/Boise CentrePlastome reduction and rearrangement in members of the mycoheterotrophic Monotropoideae (Ericaceae)
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Oral PaperBroe, Michael; Freudenstein, John.plastome
mycoheterotroph
Monotropoid
35013July 30th 11:15 amPines South/Boise CentreInvestigating the process of plastome degradation in an early-transitional mycoheterotrophic genus, Corallorhiza (Orchidaceae)
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Oral PaperBarrett, Craig; Freudenstein, John; Li, Jeff; Lim, Gwynne; Mayfield-Jones, Dustin; Perez, Leticia; Pires, J. Chris; Davis, Jerrold.parasitic
chloroplast
Photosynthesis
pseudogene
deletion
coralroot
orchid
fungus
35014July 30th 11:30 amPines South/Boise CentreOrganellar Genome Evolution in Asarum (Aristolochiaceae)
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Oral PaperSinn, Brandon T.; Freudenstein, John.Asarum
Magnoliid
plastid genome
mitochondrial genome
35015July 30th 11:45 amPines South/Boise CentreThe root of the flowering plants, re-re-revisited
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Oral PaperMarques, Isabel; Les, Don ; Macfarlane, Terry D. ; Conran, John G.; Rudall, Paula; Logacheva, Maria ; Sokoloff, Dmitry D. ; Remizowa, Margarita V. ; Graham, Sean W..

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